The motorcycle and Toyota Highlander collided just after 6 p.m. at 575 Utica Avenue in East Flatbush.
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The 39-year-old driver of the motorcycle was ejected from the vehicle.
He was taken to Kings County Hospital where he is in critical condition.
The driver of the Highlander, a 52-year-old woman, fled the scene on foot initially, but later returned.
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So far, charges have not been filed.
The investigation is ongoing.
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