The shooting happened at Fourth Avenue and 36th Street in Sunset Park near Lilian Rashkis High School.
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Police say two 18-year-olds were shot in the left shoulder.
Video shows the chaos that unfolded inside a deli when gunfire erupted outside.
The shooter can be seen opening fire. The teens are then seen running back into the store to take cover along with other customers.
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Both of the victims were taken to Lutheran Medical Center and are expected to survive.
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Two people were taken into custody and are being questioned at the 72nd Precinct.
The New York City Department of Education said that schools in the area went into a shelter in, not a lockdown, which has since been lifted.
There's no word yet on led up to the shooting.
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