Officers Jason Maass and Shane Farina were wounded as they tried to arrest Nunez, who had illegally used a student MetroCard to enter the Queens station, prosecutors said. Nunez apparently used one of the officer's guns.
"I saw the gun and I grabbed it and went wild," a criminal complaint filed by Queens prosecutors says Nunez told investigators. "I would have kept shooting but the other cop shot me and broke my leg. They started to put me in cuffs and I just grabbed the gun."
Defense attorney Kenneth Deane had no immediate comment.
Nunez said he found the subway pass on the train last week, and he struggled with the officers when they tried to arrest him, according to court papers.
"We fell down and I saw a silver gun on the ground," he said, according to the complaint. "I picked up the gun and shot the officer from about 2 feet away."
After fleeing to the upper level on an escalator, Nunez was confronted by Lt. Gary Abrahall, police said. He fired three more times before Abrahall fired six shots, hitting Nunez four times, they said.
Nunez, 32, is from the Dominican Republic and was deported June 24, 1998, by an immigration judge after a drug arrest in New York.
U.S. Immigration and Customs Enforcement agents say they're investigating how he got back into the country.
He reportedly told authorities he resisted because he was afraid he'd be deported again if he were arrested.
Farina, who was shot near his sternum and suffered a fractured rib, remained in critical but stable condition. Maass, who was shot in the lower back, was released early Wednesday from a hospital.
Both officers were wearing bulletproof vests, police said.
Nunez was shot twice in the left leg and once in the torso and right leg. His condition wasn't immediately available Thursday.
Nunez could face 25 years to life in prison and deportation if convicted. He also faces a charge of re-entering the country after deportation, federal immigration officials said.
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