The suspect is charged with attempted murder in both attacks and also faces hate crime charges in the attack on the Jewish victim, police say.
A rally took place Tuesday evening outside a synagogue in Forest Hills that was defaced during the hate-fueled rampage on Monday morning.
Officials say a suspect threw torn pieces of what likely was a Quran at the Daoud Mosque on March 9, and then smeared an unknown substance on the door.
Investigators say on March 9, the suspect threw pages from the Quran onto the steps of the Islamic Mission of America mosque on 143 State Street and then returned and smeared feces on the door.
Police say the suspect approached the 20-year-old woman and made anti-Islamic statements before throwing her to the ground.
Police say the shooter asked the victim on where he stood on the Israeli-Palestinian conflict before firing the pellet gun.